LICENSE
MANIFEST.in
README.md
pyproject.toml
src/aberrant_expression.egg-info/PKG-INFO
src/aberrant_expression.egg-info/SOURCES.txt
src/aberrant_expression.egg-info/dependency_links.txt
src/aberrant_expression.egg-info/requires.txt
src/aberrant_expression.egg-info/top_level.txt
src/abexp/__init__.py
src/abexp/absplice/__init__.py
src/abexp/absplice/dataloader.py
src/abexp/absplice/model.py
src/abexp/absplice/result.py
src/abexp/absplice/splicemap.py
src/abexp/absplice/utils.py
src/abexp/absplice/precomputed/AbSplice_DNA.onnx
src/abexp/absplice/precomputed/GENE_MAP.tsv.gz
src/abexp/absplice2/__init__.py
src/abexp/absplice2/dna.py
src/abexp/enformer/__init__.py
src/abexp/enformer/constants.py
src/abexp/enformer/enformer.py
src/abexp/enformer/logger.py
src/abexp/enformer/utils.py
src/abexp/enformer/dataloader/__init__.py
src/abexp/enformer/dataloader/dataloader.py
src/abexp/enformer/dataloader/tss_dataloader.py
src/abexp/mmsplice/__init__.py
src/abexp/mmsplice/batching.py
src/abexp/mmsplice/dataloader.py
src/abexp/mmsplice/layers.py
src/abexp/mmsplice/model.py
src/abexp/mmsplice/utils.py
src/abexp/mmsplice/models/Acceptor.h5
src/abexp/mmsplice/models/Donor.h5
src/abexp/mmsplice/models/Exon.h5
src/abexp/mmsplice/models/Intron3.h5
src/abexp/mmsplice/models/Intron5.h5
src/abexp/pangolin/__init__.py
src/abexp/pangolin/annotation.py
src/abexp/pangolin/model.py
src/abexp/pangolin/pangolin.py
src/abexp/pangolin/weights.py
src/abexp/spliceai_rocksdb/__init__.py
src/abexp/spliceai_rocksdb/spliceai.py
src/abexp/utils/__init__.py
src/abexp/utils/common.py
src/abexp/utils/gff3.py
src/abexp/utils/models/__init__.py
src/abexp/utils/models/wrappers.py
src/abexp/utils/polars_functions/__init__.py
src/abexp/utils/polars_functions/featureset.py
src/abexp/utils/polars_functions/reshape.py
src/abexp/utils/polars_functions/write.py
src/abexp/utils/spark_functions/__init__.py
src/abexp/utils/spark_functions/featureset.py
src/abexp/utils/spark_functions/reshape.py
tests/absplice2/constellations.py
tests/absplice2/make_expected.py
tests/absplice2/test_absplice2.py
tests/enformer/conftest.py
tests/enformer/test_dataloader.py
tests/enformer/test_enformer.py
tests/enformer/test_tss_dataloader.py
tests/pangolin/conftest.py
tests/pangolin/grch38_excerpt.py
tests/pangolin/make_expected.py
tests/pangolin/make_expected_published.py
tests/pangolin/synthetic.py
tests/pangolin/test_pangolin.py
tests/pangolin/test_published_weights.py
tests/pangolin/test_weights.py
tests/pangolin/data/chr22_excerpt.fa
tests/pangolin/data/chr22_excerpt.gff3
tests/splicing/conftest.py
tests/splicing/make_expected.py
tests/splicing/test_absplice.py
tests/splicing/test_mmsplice.py
tests/splicing/test_spliceai_rocksdb.py
tests/splicing/data/Whole_Blood_splicemap_psi3.csv.gz
tests/splicing/data/Whole_Blood_splicemap_psi5.csv.gz
tests/splicing/data/clinvar_chr22.spliceai.vcf
tests/splicing/data/clinvar_chr22.vcf
tests/splicing/data/expected/absplice_dna.csv
tests/splicing/data/expected/junction_samples.jsonl
tests/splicing/data/expected/mmsplice_modular_scores.csv
tests/splicing/data/expected/mmsplice_splicemap.csv
tests/splicing/data/expected/spliceai_rocksdb.csv
tests/splicing/data/expected/spliceai_vcf.csv
tests/utils/test_gff3.py
tests/utils/test_polars.py
tests/utils/test_spark.py